Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDS91496.1 | CDS94001.1 | BN1088_1270001 | BN1088_1431831 | Undecaprenyl-phosphate galactose phosphotransferase. | dTDP-4-dehydrorhamnose reductase. | 0.448 |
CDS91496.1 | CDT25019.1 | BN1088_1270001 | BN1088_330002 | Undecaprenyl-phosphate galactose phosphotransferase. | Group 2 glycosyl transferase. | 0.636 |
CDS93631.1 | CDS94001.1 | BN1088_1431601 | BN1088_1431831 | dTDP-4-dehydrorhamnose reductase. | dTDP-4-dehydrorhamnose reductase. | 0.954 |
CDS93631.1 | CDT25019.1 | BN1088_1431601 | BN1088_330002 | dTDP-4-dehydrorhamnose reductase. | Group 2 glycosyl transferase. | 0.616 |
CDS93631.1 | rfbD | BN1088_1431601 | BN1088_1690004 | dTDP-4-dehydrorhamnose reductase. | UDP-galactopyranose mutase. | 0.548 |
CDS93631.1 | rmlB | BN1088_1431601 | BN1088_1431834 | dTDP-4-dehydrorhamnose reductase. | dTDP-glucose 4,6 dehydratase, NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.996 |
CDS93631.1 | rmlC | BN1088_1431601 | BN1088_1431832 | dTDP-4-dehydrorhamnose reductase. | dTDP-4-deoxyrhamnose-3,5-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.996 |
CDS94001.1 | CDS91496.1 | BN1088_1431831 | BN1088_1270001 | dTDP-4-dehydrorhamnose reductase. | Undecaprenyl-phosphate galactose phosphotransferase. | 0.448 |
CDS94001.1 | CDS93631.1 | BN1088_1431831 | BN1088_1431601 | dTDP-4-dehydrorhamnose reductase. | dTDP-4-dehydrorhamnose reductase. | 0.954 |
CDS94001.1 | CDT25019.1 | BN1088_1431831 | BN1088_330002 | dTDP-4-dehydrorhamnose reductase. | Group 2 glycosyl transferase. | 0.720 |
CDS94001.1 | rfbD | BN1088_1431831 | BN1088_1690004 | dTDP-4-dehydrorhamnose reductase. | UDP-galactopyranose mutase. | 0.548 |
CDS94001.1 | rmlB | BN1088_1431831 | BN1088_1431834 | dTDP-4-dehydrorhamnose reductase. | dTDP-glucose 4,6 dehydratase, NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.998 |
CDS94001.1 | rmlC | BN1088_1431831 | BN1088_1431832 | dTDP-4-dehydrorhamnose reductase. | dTDP-4-deoxyrhamnose-3,5-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.999 |
CDT25019.1 | CDS91496.1 | BN1088_330002 | BN1088_1270001 | Group 2 glycosyl transferase. | Undecaprenyl-phosphate galactose phosphotransferase. | 0.636 |
CDT25019.1 | CDS93631.1 | BN1088_330002 | BN1088_1431601 | Group 2 glycosyl transferase. | dTDP-4-dehydrorhamnose reductase. | 0.616 |
CDT25019.1 | CDS94001.1 | BN1088_330002 | BN1088_1431831 | Group 2 glycosyl transferase. | dTDP-4-dehydrorhamnose reductase. | 0.720 |
CDT25019.1 | CDT25042.1 | BN1088_330002 | BN1088_330004 | Group 2 glycosyl transferase. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.735 |
CDT25019.1 | mraY | BN1088_330002 | BN1088_1431022 | Group 2 glycosyl transferase. | Phospho-N-acetylmuramoyl-pentapeptide- transferase. | 0.581 |
CDT25019.1 | rfbD | BN1088_330002 | BN1088_1690004 | Group 2 glycosyl transferase. | UDP-galactopyranose mutase. | 0.608 |
CDT25019.1 | ribF | BN1088_330002 | BN1088_1432638 | Group 2 glycosyl transferase. | Putative FAD synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.624 |
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