STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDT31407.1ATP-independent RNA helicase. (434 aa)    
Predicted Functional Partners:
pnp
Polynucleotide phosphorylase/polyadenylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.960
rplD
50S ribosomal protein L4.
   
 0.959
fusA
Protein chain elongation factor EF-G, GTP-binding; Function of homologous gene experimentally demonstrated in an other organism; factor.
   
 0.957
rplJ
50S ribosomal protein L10; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
 0.953
rrm
Nol1/Nop2/Sun family protein.
   
 0.948
rpmD
50S ribosomal subunit protein L30; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
 0.948
CDS98132.1
DEAD/DEAH box helicase domain protein.
  
  
  0.946
CDT03194.1
Sugar kinase.
  
 0.946
atpD
Membrane-bound ATP synthase, F1 sector, beta-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.940
atpA
F1 sector of membrane-bound ATP synthase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.939
Your Current Organism:
Sphingobacterium sp. PM2P129
NCBI taxonomy Id: 403776
Other names: S. sp. PM2-P1-29, Sphingobacterium sp. PM2-P1-29
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.