STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0024PFAM: phosphoribosyltransferase; KEGG: tma:TM1584 comFC protein, putative. (206 aa)    
Predicted Functional Partners:
Pmob_0022
Hypothetical protein.
  
  
 0.799
Pmob_0023
Hypothetical protein.
       0.797
Pmob_0538
KEGG: mgm:Mmc1_2227 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.753
Pmob_1465
PFAM: DNA repair protein RadC; KEGG: tma:TM1557 DNA repair protein; Belongs to the UPF0758 family.
  
    0.750
Pmob_1762
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: tpt:Tpet_1780 phage integrase family protein; Belongs to the 'phage' integrase family.
  
    0.726
Pmob_1317
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tma:TM0250 DNA processing chain A.
 
 
 0.718
Pmob_1203
PFAM: Prephenate dehydrogenase; KEGG: cff:CFF8240_1500 prephenate dehydrogenase.
   
  
 0.716
Pmob_0105
KEGG: tpt:Tpet_0260 hypothetical protein.
   
    0.702
Pmob_1685
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: fno:Fnod_1715 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.697
Pmob_0021
Hypothetical protein.
       0.692
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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