Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0076KEGG: pca:Pcar_1703 coenzyme F390 synthetase. (442 aa)    
Predicted Functional Partners:
Pmob_0275
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pdi:BDI_2252 delta-1-pyrroline-5-carboxylate dehydrogenase.
  
 
 0.788
Pmob_0075
PFAM: Appr-1-p processing domain protein; KEGG: tma:TM0508 putative ATPase.
       0.781
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.698
Pmob_0404
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cbf:CLI_1631 transcriptional regulator, LuxR family.
  
    0.594
Pmob_1087
Hypothetical protein; KEGG: rba:RB13291 general secretion pathway protein D (outD); Belongs to the bacterial secretin family.
  
     0.554
Pmob_1611
LVIVD repeat protein; PFAM: Fibronectin type III domain protein; LVIVD repeat protein; KEGG: mma:MM_0391 hypothetical protein.
  
     0.505
Pmob_0403
Hypothetical protein; KEGG: mhu:Mhun_1291 mucin 2, intestinal/tracheal.
  
     0.498
Pmob_1235
Hypothetical protein; KEGG: gfo:GFO_1492 3-dehydroquinate synthase.
 
     0.481
Pmob_1135
PFAM: glycoside hydrolase family 13 domain protein; KEGG: tma:TM1844 hypothetical protein.
  
     0.462
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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