STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0088TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tme:Tmel_1245 cation diffusion facilitator family transporter. (300 aa)    
Predicted Functional Partners:
Pmob_0089
Hypothetical protein; KEGG: spu:589341 similar to LOC496288 protein.
       0.762
Pmob_0087
KEGG: tpt:Tpet_1519 hypothetical protein.
       0.678
Pmob_0090
PFAM: protein of unknown function DUF355; KEGG: sso:SSO0651 hypothetical protein.
       0.645
Pmob_0572
PFAM: iron dependent repressor; FeoA family protein; KEGG: pab:PAB0714 iron-dependent repressor.
     
 0.502
Pmob_0091
PFAM: PEBP family protein; KEGG: pab:PAB0765 hypothetical protein.
       0.495
Pmob_0086
PFAM: Rubrerythrin; KEGG: fno:Fnod_0888 rubrerythrin.
       0.482
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
    0.476
Pmob_1026
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tma:TM0876 hypothetical protein.
 
 
0.463
Pmob_1670
PFAM: zinc/iron permease; KEGG: ctc:CTC01320 GufA protein.
  
 0.450
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.404
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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