STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0136Ferroxidase; Iron-storage protein. (163 aa)    
Predicted Functional Partners:
Pmob_1631
PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: fno:Fnod_0468 desulfoferrodoxin ferrous iron-binding region.
  
  
 0.828
Pmob_0396
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.610
Pmob_0572
PFAM: iron dependent repressor; FeoA family protein; KEGG: pab:PAB0714 iron-dependent repressor.
     
 0.495
Pmob_1630
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tpt:Tpet_0272 rubredoxin-type Fe(Cys)4 protein.
  
  
 0.481
rpsP
PFAM: ribosomal protein S16; KEGG: tpt:Tpet_1226 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.437
Pmob_0137
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tpt:Tpet_0550 methyl-accepting chemotaxis sensory transducer.
  
  
 0.426
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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