STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0146TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: HAD-superfamily phosphatase subfamily IIIA; KEGG: bcl:ABC1636 hydrolase, HAD superfamily. (354 aa)    
Predicted Functional Partners:
Pmob_0147
KEGG: tpt:Tpet_0755 hypothetical protein.
       0.800
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
 
     0.682
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
  
     0.644
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
  
     0.578
Pmob_0841
KEGG: tma:TM0848 hypothetical protein.
 
  
 0.576
Pmob_0148
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: tpt:Tpet_0425 PhoH family protein.
       0.530
Pmob_0905
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tpt:Tpet_0931 cell envelope-related transcriptional attenuator.
  
     0.526
Pmob_0882
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tpt:Tpet_1143 metal dependent phosphohydrolase.
 
  
 0.505
Pmob_0597
KEGG: tma:TM1740 hypothetical protein.
  
     0.503
Pmob_1093
KEGG: tme:Tmel_0518 nuclease (RecB family)-like protein.
  
     0.492
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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