Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pmob_0151 | Pmob_0152 | Pmob_0151 | Pmob_0152 | Hypothetical protein. | Hypothetical protein. | 0.687 |
Pmob_0151 | Pmob_0153 | Pmob_0151 | Pmob_0153 | Hypothetical protein. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.685 |
Pmob_0151 | Pmob_0154 | Pmob_0151 | Pmob_0154 | Hypothetical protein. | Conserved hypothetical protein; Displays ATPase and GTPase activities. | 0.650 |
Pmob_0151 | Pmob_0155 | Pmob_0151 | Pmob_0155 | Hypothetical protein. | Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. | 0.556 |
Pmob_0151 | greA | Pmob_0151 | Pmob_0158 | Hypothetical protein. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.442 |
Pmob_0151 | nrdR | Pmob_0151 | Pmob_0157 | Hypothetical protein. | ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.512 |
Pmob_0151 | whiA | Pmob_0151 | Pmob_0156 | Hypothetical protein. | Protein of unknown function DUF199; Involved in cell division and chromosome segregation. | 0.569 |
Pmob_0152 | Pmob_0151 | Pmob_0152 | Pmob_0151 | Hypothetical protein. | Hypothetical protein. | 0.687 |
Pmob_0152 | Pmob_0153 | Pmob_0152 | Pmob_0153 | Hypothetical protein. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.791 |
Pmob_0152 | Pmob_0154 | Pmob_0152 | Pmob_0154 | Hypothetical protein. | Conserved hypothetical protein; Displays ATPase and GTPase activities. | 0.750 |
Pmob_0152 | Pmob_0155 | Pmob_0152 | Pmob_0155 | Hypothetical protein. | Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. | 0.640 |
Pmob_0152 | greA | Pmob_0152 | Pmob_0158 | Hypothetical protein. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.505 |
Pmob_0152 | lysS | Pmob_0152 | Pmob_0159 | Hypothetical protein. | TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tpt:Tpet_1001 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.424 |
Pmob_0152 | nrdR | Pmob_0152 | Pmob_0157 | Hypothetical protein. | ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.585 |
Pmob_0152 | whiA | Pmob_0152 | Pmob_0156 | Hypothetical protein. | Protein of unknown function DUF199; Involved in cell division and chromosome segregation. | 0.652 |
Pmob_0153 | Pmob_0151 | Pmob_0153 | Pmob_0151 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Hypothetical protein. | 0.685 |
Pmob_0153 | Pmob_0152 | Pmob_0153 | Pmob_0152 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Hypothetical protein. | 0.791 |
Pmob_0153 | Pmob_0154 | Pmob_0153 | Pmob_0154 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Conserved hypothetical protein; Displays ATPase and GTPase activities. | 0.760 |
Pmob_0153 | Pmob_0155 | Pmob_0153 | Pmob_0155 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. | 0.669 |
Pmob_0153 | greA | Pmob_0153 | Pmob_0158 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.623 |
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