Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0180KEGG: tme:Tmel_0674 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB. (434 aa)    
Predicted Functional Partners:
Pmob_0179
PFAM: aminotransferase class IV; KEGG: tpt:Tpet_0096 aminotransferase, class IV.
       0.820
Pmob_0181
PFAM: CBS domain containing protein; KEGG: tme:Tmel_0675 putative signal transduction protein with CBS domains.
       0.786
Pmob_0182
PFAM: PfkB domain protein; KEGG: tma:TM0828 sugar kinase, PfkB family.
       0.761
Pmob_0177
DNA topoisomerase (ATP-hydrolyzing); KEGG: tma:TM0833 DNA gyrase, subunit B; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II.
     
 0.725
Pmob_0175
PFAM: cell division protein FtsA; KEGG: tme:Tmel_1274 cell division protein FtsA.
  
    0.707
Pmob_0173
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: ctc:CTC01604 general secretion pathway protein E.
       0.697
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
       0.697
Pmob_0178
Hypothetical protein.
       0.675
Pmob_0172
Hypothetical protein; KEGG: tpt:Tpet_0089 S-layer domain-like protein.
       0.641
Pmob_0176
Hypothetical protein.
       0.632
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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