STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0189PFAM: PGAP1 family protein; KEGG: tme:Tmel_0127 hypothetical protein. (784 aa)    
Predicted Functional Partners:
Pmob_0190
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: tme:Tmel_1392 tetratricopeptide TPR_2 repeat protein.
       0.653
Pmob_0188
PFAM: Polyprenyl synthetase; KEGG: tma:TM0161 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.649
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.590
Pmob_0803
PFAM: ribosomal protein L27; KEGG: tme:Tmel_1034 ribosomal protein L27.
   
   0.590
rpsP
PFAM: ribosomal protein S16; KEGG: tpt:Tpet_1226 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.578
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.578
rpmG
PFAM: ribosomal protein L33; KEGG: fno:Fnod_0850 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.578
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.578
rplQ
PFAM: ribosomal protein L17; KEGG: tma:TM1471 50S ribosomal protein L17.
    
   0.578
rpmJ
PFAM: ribosomal protein L36; KEGG: lre:Lreu_1460 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.578
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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