Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Pmob_0198PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase. (874 aa)    
Predicted Functional Partners:
Pmob_1613
PFAM: polysaccharide export protein; KEGG: tme:Tmel_0660 polysaccharide export protein.
 
  
 0.885
Pmob_0959
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tme:Tmel_1405 hypothetical protein.
 
  
 0.842
Pmob_1716
PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tme:Tmel_1557 peptidoglycan-binding LysM.
 
    0.821
Pmob_1352
PFAM: permease YjgP/YjgQ family protein; KEGG: tme:Tmel_1543 permease YjgP/YjgQ family protein.
 
   
 0.800
Pmob_0126
PFAM: glycosyl transferase group 1; KEGG: tpt:Tpet_0309 hypothetical protein.
 
  
 0.799
Pmob_1372
PFAM: Lytic transglycosylase catalytic; KEGG: mxa:MXAN_4628 transglycosylase SLT domain protein.
  
  
 0.785
Pmob_0878
KEGG: tme:Tmel_1841 hypothetical protein.
 
     0.784
Pmob_0824
KEGG: ppr:PBPRB1987 hypothetical protein.
 
     0.776
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
  
     0.775
Pmob_1228
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: tpt:Tpet_0472 surface antigen (D15).
  
     0.775
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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