Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0231Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase. (1041 aa)    
Predicted Functional Partners:
Pmob_0232
PFAM: polysaccharide deacetylase; KEGG: csc:Csac_0205 polysaccharide deacetylase.
 
   
 0.800
Pmob_0229
PFAM: glycoside hydrolase family 3 domain protein; KEGG: tma:TM0076 beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.786
Pmob_0436
PFAM: lipolytic protein G-D-S-L family; KEGG: lmf:LMOf2365_0524 lipase/acylhydrolase family protein.
 
 
 
 0.723
Pmob_0497
PFAM: glycoside hydrolase family 2 sugar binding; KEGG: tma:TM1624 beta-mannosidase, putative; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.640
Pmob_0233
KEGG: bad:BAD_0299 putative outer membrane protein.
 
   
 0.571
Pmob_0238
PFAM: extracellular solute-binding protein family 5; KEGG: tpt:Tpet_0853 extracellular solute-binding protein, family 5.
 
    0.567
Pmob_1074
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214.
  
     0.483
Pmob_0540
PFAM: Auxin Efflux Carrier; KEGG: tma:TM0229 hypothetical protein.
  
     0.465
Pmob_0236
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0851 binding-protein-dependent transport systems inner membrane component.
 
     0.464
Pmob_0829
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bld:BLi00447 close homolog to LacA beta-galactosidase; RBL00406.
 
   
 0.442
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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