Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0233KEGG: bad:BAD_0299 putative outer membrane protein. (638 aa)    
Predicted Functional Partners:
xylA
KEGG: tma:TM1667 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
  
  
 0.844
uxaC
PFAM: Glucuronate isomerase; KEGG: tma:TM0064 uronate isomerase, putative.
  
  
 0.840
Pmob_0232
PFAM: polysaccharide deacetylase; KEGG: csc:Csac_0205 polysaccharide deacetylase.
 
   
 0.766
Pmob_0234
KEGG: tpt:Tpet_0849 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.648
Pmob_0235
KEGG: tpt:Tpet_0850 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.648
Pmob_0236
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0851 binding-protein-dependent transport systems inner membrane component.
       0.648
Pmob_0237
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0852 binding-protein-dependent transport systems inner membrane component.
       0.644
Pmob_0231
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase.
 
   
 0.571
Pmob_0436
PFAM: lipolytic protein G-D-S-L family; KEGG: lmf:LMOf2365_0524 lipase/acylhydrolase family protein.
 
 
 0.518
Pmob_0238
PFAM: extracellular solute-binding protein family 5; KEGG: tpt:Tpet_0853 extracellular solute-binding protein, family 5.
     
 0.507
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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