STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0300KEGG: tpt:Tpet_0643 protein of unknown function DUF1680. (58 aa)    
Predicted Functional Partners:
Pmob_0302
PFAM: 3-dehydroquinate synthase; KEGG: cbe:Cbei_2364 glycerol-1-phosphate dehydrogenase (NAD(P)(+)).
       0.567
Pmob_0301
PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; Helix-turn-helix type 11 domain protein; KEGG: tma:TM0275 transcriptional regulator, GntR family.
       0.556
Pmob_0299
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mac:MA2406 transposase.
       0.541
Pmob_0298
PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: drm:Dred_1292 signal transduction histidine kinase.
       0.407
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.