Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0367PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_0389 daunorubicin resistance ABC transporter, ATPase subunit. (309 aa)    
Predicted Functional Partners:
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.788
Pmob_0368
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tme:Tmel_0831 ABC transporter related.
 
 
 
0.745
Pmob_1578
KEGG: tpt:Tpet_0419 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.732
Pmob_0369
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vvy:VV2128 glycosidase; Belongs to the glycosyl hydrolase 13 family.
       0.689
Pmob_1861
ABC-type polar amino acid transport system ATPase component-like protein; KEGG: fno:Fnod_0972 ABC transporter, ATP-binding protein, putative.
 
     0.672
Pmob_0506
PFAM: ABC transporter related; KEGG: tde:TDE2363 high-affinity branched chain amino acid ABC transporter, ATP-binding protein.
 
    
0.663
Pmob_0364
Methylated-DNA--(protein)-cysteine S-methyltransferase; SMART: AAA ATPase; KEGG: tma:TM0199 DNA repair protein.
       0.611
Pmob_0365
PFAM: helix-hairpin-helix motif; protein of unknown function DUF147; KEGG: tma:TM0200 hypothetical protein; Belongs to the DisA family.
       0.611
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
    0.594
Pmob_0479
KEGG: smr:Smar_1329 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.578
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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