STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0487KEGG: fno:Fnod_1042 GCN5-related N-acetyltransferase. (159 aa)    
Predicted Functional Partners:
Pmob_0488
PFAM: extracellular solute-binding protein family 5; KEGG: pfu:PF1209 oligopeptide ABC transporter (oligopeptide-binding protein).
 
     0.522
Pmob_0486
PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: tte:TTE2516 hypothetical DNA polymerase / putative histidinol phosphatase.
       0.509
Pmob_1419
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: tma:TM0656 hypothetical protein.
  
  
 0.419
Pmob_0489
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0893 binding-protein-dependent transport systems inner membrane component.
 
     0.417
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.