STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0537PFAM: phosphoadenosine phosphosulfate reductase; ExsB family protein; KEGG: tpt:Tpet_1669 ExsB family protein. (322 aa)    
Predicted Functional Partners:
Pmob_0538
KEGG: mgm:Mmc1_2227 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.752
Pmob_0129
KEGG: ser:SERP0256 hypothetical protein.
  
  
 0.684
Pmob_0536
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tme:Tmel_0645 diguanylate cyclase.
       0.532
Pmob_0539
PFAM: Acetamidase/Formamidase; KEGG: bat:BAS2418 acetamidase/formamidase family protein.
       0.491
Pmob_0535
TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: fno:Fnod_1252 gluconate transporter.
       0.490
Pmob_0534
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: fno:Fnod_1253 hydroxypyruvate reductase.
       0.481
Pmob_0540
PFAM: Auxin Efflux Carrier; KEGG: tma:TM0229 hypothetical protein.
       0.472
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.