Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0551PFAM: ArgK protein; KEGG: fno:Fnod_1321 LAO/AO transport system ATPase. (310 aa)    
Predicted Functional Partners:
Pmob_0550
PFAM: cobalamin B12-binding domain protein; KEGG: tme:Tmel_0582 cobalamin B12-binding domain protein.
 
 0.999
Pmob_0549
KEGG: tme:Tmel_1860 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
 
 0.998
Pmob_0552
TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fno:Fnod_1316 glyoxalase/bleomycin resistance protein/dioxygenase.
     0.994
Pmob_0985
PFAM: cobalamin B12-binding domain protein; KEGG: tme:Tmel_0082 cobalamin B12-binding domain protein.
  
 
 0.852
Pmob_0553
PFAM: carboxyl transferase; KEGG: fno:Fnod_1317 carboxyl transferase.
 
   
 0.712
Pmob_0554
PFAM: sodium pump decarboxylase gamma subunit.
       0.626
Pmob_0555
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: tpt:Tpet_0212 biotin/lipoyl attachment domain-containing protein.
       0.577
Pmob_0556
PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: tpt:Tpet_1694 TrkA-N domain protein.
       0.433
Pmob_0557
KEGG: fno:Fnod_1051 hypothetical protein.
       0.422
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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