STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0590PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: tpt:Tpet_0982 ErfK/YbiS/YcfS/YnhG family protein. (389 aa)    
Predicted Functional Partners:
gltX1
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
 
     0.825
Pmob_0595
PFAM: outer membrane chaperone Skp (OmpH); KEGG: tma:TM1053 cationic outer membrane protein.
 
     0.809
Pmob_0591
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.800
Pmob_0594
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_0090 ABC transporter related.
  
    0.799
Pmob_0593
PFAM: conserved hypothetical protein; KEGG: tma:TM1055 hypothetical protein.
  
    0.798
Pmob_0596
TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: tme:Tmel_1517 RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.684
Pmob_0597
KEGG: tma:TM1740 hypothetical protein.
       0.662
Pmob_0598
PFAM: glycosyl transferase group 1; KEGG: fno:Fnod_1696 glycosyl transferase group 1.
       0.662
Pmob_1716
PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tme:Tmel_1557 peptidoglycan-binding LysM.
 
    0.623
Pmob_1093
KEGG: tme:Tmel_0518 nuclease (RecB family)-like protein.
  
     0.528
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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