Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0607PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: tpt:Tpet_1334 single-stranded nucleic acid binding R3H domain protein. (217 aa)    
Predicted Functional Partners:
Pmob_0606
PFAM: 60 kDa inner membrane insertion protein; KEGG: tma:TM1461 60kDa inner-membrane protein.
  
  
 0.966
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
  
 0.940
Pmob_0605
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.926
Pmob_0321
KEGG: tme:Tmel_1804 RNA-binding protein (contains KH domain)-like protein; Belongs to the UPF0109 family.
  
 
 0.919
rpmH
PFAM: ribosomal protein L34; KEGG: tme:Tmel_1628 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.842
Pmob_1450
PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family.
   
 
 0.715
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.627
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.619
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
    0.614
Pmob_0608
Hypothetical protein.
       0.594
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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