Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pmob_0617 | Pmob_0619 | Pmob_0617 | Pmob_0619 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | 0.762 |
Pmob_0617 | Pmob_0621 | Pmob_0617 | Pmob_0621 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | 0.500 |
Pmob_0617 | Pmob_0622 | Pmob_0617 | Pmob_0622 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Hypothetical protein. | 0.500 |
Pmob_0617 | Pmob_0623 | Pmob_0617 | Pmob_0623 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | PFAM: type II secretion system protein; KEGG: tme:Tmel_1749 type II secretion system protein. | 0.518 |
Pmob_0617 | Pmob_0624 | Pmob_0617 | Pmob_0624 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Hypothetical protein. | 0.436 |
Pmob_0617 | alaS | Pmob_0617 | Pmob_0620 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.629 |
Pmob_0617 | frr | Pmob_0617 | Pmob_0616 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.957 |
Pmob_0619 | Pmob_0617 | Pmob_0619 | Pmob_0617 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.762 |
Pmob_0619 | Pmob_0621 | Pmob_0619 | Pmob_0621 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | 0.507 |
Pmob_0619 | Pmob_0622 | Pmob_0619 | Pmob_0622 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | Hypothetical protein. | 0.507 |
Pmob_0619 | Pmob_0623 | Pmob_0619 | Pmob_0623 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | PFAM: type II secretion system protein; KEGG: tme:Tmel_1749 type II secretion system protein. | 0.636 |
Pmob_0619 | Pmob_0624 | Pmob_0619 | Pmob_0624 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | Hypothetical protein. | 0.442 |
Pmob_0619 | alaS | Pmob_0619 | Pmob_0620 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.507 |
Pmob_0619 | frr | Pmob_0619 | Pmob_0616 | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.762 |
Pmob_0621 | Pmob_0617 | Pmob_0621 | Pmob_0617 | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.500 |
Pmob_0621 | Pmob_0619 | Pmob_0621 | Pmob_0619 | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | Hypothetical protein; KEGG: tma:TM1271 type IV pilin-related protein. | 0.507 |
Pmob_0621 | Pmob_0622 | Pmob_0621 | Pmob_0622 | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | Hypothetical protein. | 0.773 |
Pmob_0621 | Pmob_0623 | Pmob_0621 | Pmob_0623 | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | PFAM: type II secretion system protein; KEGG: tme:Tmel_1749 type II secretion system protein. | 0.772 |
Pmob_0621 | Pmob_0624 | Pmob_0621 | Pmob_0624 | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | Hypothetical protein. | 0.662 |
Pmob_0621 | Pmob_0625 | Pmob_0621 | Pmob_0625 | PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase. | Hypothetical protein. | 0.583 |
page 1 of 5