STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0623PFAM: type II secretion system protein; KEGG: tme:Tmel_1749 type II secretion system protein. (382 aa)    
Predicted Functional Partners:
Pmob_0173
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: ctc:CTC01604 general secretion pathway protein E.
 
 
 0.992
Pmob_0022
Hypothetical protein.
  
  
 0.931
Pmob_0621
PFAM: Patatin; KEGG: bpu:BPUM_1397 possible alpha-beta hydrolase family esterase.
 
     0.772
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.759
Pmob_0622
Hypothetical protein.
       0.741
Pmob_1233
KEGG: tpt:Tpet_1699 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.
 
  
 0.735
Pmob_0094
KEGG: tme:Tmel_1255 hypothetical protein.
   
 
 0.700
Pmob_0624
Hypothetical protein.
       0.689
Pmob_0559
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tme:Tmel_0637 single-strand binding protein.
  
    0.664
Pmob_0627
Hypothetical protein.
       0.645
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.