STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0654PFAM: SufBD protein; KEGG: tme:Tmel_0049 SufBD protein. (405 aa)    
Predicted Functional Partners:
Pmob_0656
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: fno:Fnod_1259 FeS assembly ATPase SufC.
 
 
 0.994
Pmob_0653
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.992
Pmob_0652
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: tpt:Tpet_1411 SUF system FeS assembly protein, NifU family.
 
  
 0.975
Pmob_0655
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: tpt:Tpet_1414 FeS assembly protein SufB.
 
    
0.780
Pmob_0651
PFAM: CoA-binding domain protein; KEGG: tma:TM1435 hypothetical protein.
       0.775
Pmob_1674
PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein.
 
   
 0.503
Pmob_0572
PFAM: iron dependent repressor; FeoA family protein; KEGG: pab:PAB0714 iron-dependent repressor.
     
 0.489
pyrD
Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate with NAD(+) as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.
     
 0.440
pyrK
Oxidoreductase FAD/NAD(P)-binding domain protein; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
       0.421
pyrF
TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cac:CAC2652 orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.417
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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