STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0666PFAM: ABC-2 type transporter; KEGG: tme:Tmel_0407 ABC-2 type transporter. (270 aa)    
Predicted Functional Partners:
Pmob_0667
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpe:Tpen_1400 daunorubicin resistance ABC transporter ATPase subunit.
 
  
 0.871
Pmob_0662
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_0448 ABC transporter, ATP-binding protein.
  
  
 0.657
Pmob_0665
KEGG: chy:CHY_0445 hypothetical protein.
       0.548
Pmob_0663
KEGG: fno:Fnod_0540 hypothetical protein.
       0.534
Pmob_0664
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: tte:TTE0438 predicted transcriptional regulator.
       0.534
Pmob_0277
PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_0539 ABC-2 type transporter.
  
  
  0.526
Pmob_1895
PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase.
  
  
 0.524
Pmob_0276
PFAM: ABC-2 type transporter; KEGG: tma:TM0387 putative ABC-2 type transport system permease protein.
  
  
  0.507
Pmob_1888
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_0254 ABC transporter related.
 
  
 0.470
Pmob_1544
PFAM: Abortive infection protein; KEGG: tme:Tmel_0599 abortive infection protein.
  
  
 0.453
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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