STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0676PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: det:DET1339 ABC transporter, ATP-binding protein. (298 aa)    
Predicted Functional Partners:
Pmob_0677
KEGG: pab:PAB0111 hypothetical protein.
  
    0.784
Pmob_0674
Hypothetical protein.
       0.773
Pmob_0675
Hypothetical protein.
       0.773
Pmob_0678
PFAM: Radical SAM domain protein; KEGG: cbf:CLI_3234 radical SAM domain protein.
       0.773
Pmob_1578
KEGG: tpt:Tpet_0419 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
0.711
Pmob_1784
KEGG: tpt:Tpet_1598 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
0.695
Pmob_1185
KEGG: tme:Tmel_0456 hypothetical protein.
  
 
 0.613
Pmob_1324
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: tma:TM0498 putative oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
0.592
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
    0.549
Pmob_1861
ABC-type polar amino acid transport system ATPase component-like protein; KEGG: fno:Fnod_0972 ABC transporter, ATP-binding protein, putative.
 
     0.537
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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