STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0701PFAM: basic membrane lipoprotein; KEGG: tpt:Tpet_0822 basic membrane lipoprotein. (364 aa)    
Predicted Functional Partners:
Pmob_1679
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_0821 ABC transporter related.
 
 0.973
Pmob_0916
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_2324 ABC transporter related.
 
 0.969
Pmob_1677
PFAM: inner-membrane translocator; KEGG: tme:Tmel_0019 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.964
Pmob_0917
PFAM: inner-membrane translocator; KEGG: rca:Rcas_1632 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.963
Pmob_0918
PFAM: inner-membrane translocator; KEGG: smd:Smed_3657 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.963
Pmob_1678
PFAM: inner-membrane translocator; KEGG: tma:TM0104 simple sugar transport system permease protein.
 
 
 0.963
Pmob_0699
PFAM: chemotaxis sensory transducer; KEGG: fno:Fnod_0355 methyl-accepting chemotaxis sensory transducer.
       0.523
Pmob_0700
PFAM: beta-lactamase domain protein; KEGG: tpt:Tpet_0910 beta-lactamase domain protein.
       0.523
Pmob_0698
PFAM: HI0933 family protein; KEGG: dsy:DSY2873 hypothetical protein.
       0.453
Pmob_0702
PFAM: protein of unknown function UPF0102; KEGG: fnu:FN1370 endonuclease; Belongs to the UPF0102 family.
       0.434
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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