STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0725KEGG: amt:Amet_0639 NADH dehydrogenase (quinone). (124 aa)    
Predicted Functional Partners:
Pmob_0723
TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cbf:CLI_1849 [Fe] hydrogenase.
 
 
 0.999
Pmob_1149
TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: pth:PTH_2010 hypothetical hydrogenase subunit.
 
 
 0.999
Pmob_0726
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: drm:Dred_3292 NADH dehydrogenase (ubiquinone), 24 kDa subunit.
 
 
 0.965
Pmob_0724
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tpt:Tpet_0913 NADH dehydrogenase (quinone).
   
 0.935
Pmob_1151
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tpt:Tpet_0697 NADH-quinone oxidoreductase, E subunit.
 
 
 0.792
Pmob_0386
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: chy:CHY_0733 NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing.
  
 
 0.728
Pmob_0885
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tma:TM1217 glutamate synthase (NADPH) small chain.
  
  
 0.512
Pmob_0458
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpt:Tpet_1585 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.468
Pmob_1150
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tme:Tmel_1168 NADH dehydrogenase (quinone).
   
 0.462
Pmob_0727
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: oan:Oant_3410 oxidoreductase domain protein.
       0.457
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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