STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0802Membrane protein-like protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. (186 aa)    
Predicted Functional Partners:
Pmob_0804
PFAM: protein of unknown function DUF464; KEGG: fno:Fnod_0437 protein of unknown function DUF464.
 
     0.824
Pmob_0803
PFAM: ribosomal protein L27; KEGG: tme:Tmel_1034 ribosomal protein L27.
       0.800
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.800
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.781
rpsI
PFAM: ribosomal protein S9; KEGG: tpt:Tpet_1341 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.754
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.641
Pmob_0806
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0041 glycosyl transferase, family 51.
 
     0.563
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
  
     0.522
Pmob_0455
PFAM: cobalt transport protein; KEGG: ssa:SSA_2365 cobalt transport protein CbiQ, putative.
 
   
 0.459
Pmob_1942
PFAM: protein of unknown function DUF327; KEGG: tme:Tmel_0835 protein of unknown function DUF327.
  
     0.449
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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