STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0812PFAM: glycoside hydrolase family 1; KEGG: smr:Smar_1391 glycoside hydrolase, family 1; Belongs to the glycosyl hydrolase 1 family. (375 aa)    
Predicted Functional Partners:
Pmob_0493
Beta-galactosidase; KEGG: tpt:Tpet_0952 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
  
     0.761
Pmob_0816
KEGG: tpt:Tpet_0566 outer membrane protein-like protein.
     
 0.752
Pmob_0817
KEGG: tpt:Tpet_0565 outer membrane protein-like protein.
     
 0.752
Pmob_0814
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_0568 ABC transporter related.
  
    0.747
Pmob_0813
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0569 protein of unknown function DUF214.
       0.746
Pmob_0815
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tpt:Tpet_0567 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.746
Pmob_0182
PFAM: PfkB domain protein; KEGG: tma:TM0828 sugar kinase, PfkB family.
  
  
 0.575
Pmob_1788
1-phosphofructokinase; KEGG: tme:Tmel_1834 PfkB domain protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.575
Pmob_1236
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: fno:Fnod_0790 ribose 5-phosphate isomerase B.
  
  
 0.520
ftsH2
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
       0.436
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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