STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0814PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_0568 ABC transporter related. (231 aa)    
Predicted Functional Partners:
Pmob_0813
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0569 protein of unknown function DUF214.
 
 0.998
Pmob_0815
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tpt:Tpet_0567 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.976
Pmob_1517
PFAM: protein of unknown function DUF214; KEGG: ctc:CTC01418 putative permease.
 
 
 0.928
Pmob_1325
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: tma:TM0530 putative oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.898
Pmob_1579
KEGG: tme:Tmel_1732 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.898
Pmob_0906
PFAM: protein of unknown function DUF214; KEGG: sfu:Sfum_3743 lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 
 0.895
Pmob_1655
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smr:Smar_1543 polar amino acid ABC transporter, inner membrane subunit.
 
 
  
 0.887
Pmob_0817
KEGG: tpt:Tpet_0565 outer membrane protein-like protein.
  
 
 0.863
Pmob_0816
KEGG: tpt:Tpet_0566 outer membrane protein-like protein.
  
 
 0.858
Pmob_1074
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214.
  
 
 0.778
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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