STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0878KEGG: tme:Tmel_1841 hypothetical protein. (561 aa)    
Predicted Functional Partners:
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
 
     0.785
Pmob_1228
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: tpt:Tpet_0472 surface antigen (D15).
 
     0.784
Pmob_1683
PFAM: polysaccharide pyruvyl transferase; KEGG: fno:Fnod_0990 polysaccharide pyruvyl transferase.
 
     0.774
Pmob_0311
KEGG: tme:Tmel_0921 hypothetical protein.
 
     0.773
Pmob_1087
Hypothetical protein; KEGG: rba:RB13291 general secretion pathway protein D (outD); Belongs to the bacterial secretin family.
  
     0.769
Pmob_1613
PFAM: polysaccharide export protein; KEGG: tme:Tmel_0660 polysaccharide export protein.
  
     0.768
Pmob_1716
PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tme:Tmel_1557 peptidoglycan-binding LysM.
  
    0.768
Pmob_1611
LVIVD repeat protein; PFAM: Fibronectin type III domain protein; LVIVD repeat protein; KEGG: mma:MM_0391 hypothetical protein.
  
     0.767
Pmob_1624
PFAM: S-layer domain protein; KEGG: tme:Tmel_1771 S-layer domain protein.
  
    0.767
Pmob_1352
PFAM: permease YjgP/YjgQ family protein; KEGG: tme:Tmel_1543 permease YjgP/YjgQ family protein.
 
     0.764
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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