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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase; PFAM: amidinotransferase; KEGG: cbf:CLI_1668 arginine deiminase. (406 aa)    
Predicted Functional Partners:
Pmob_0068
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.998
Pmob_0069
TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: tme:Tmel_1927 carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.930
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: tte:TTE2493 argininosuccinate lyase.
     
 0.917
Pmob_0971
PFAM: alanine racemase domain protein; KEGG: tma:TM1597 hypothetical protein.
    
  0.814
Pmob_1731
PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: tme:Tmel_0118 aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.791
Pmob_0903
KEGG: tme:Tmel_1815 GTPase-like protein.
       0.773
Pmob_0901
PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ctc:CTC00497 pyridoxal kinase; Belongs to the pyridoxine kinase family.
       0.608
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.588
Pmob_0904
KEGG: tma:TM1647 hypothetical protein.
       0.563
Pmob_0905
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tpt:Tpet_0931 cell envelope-related transcriptional attenuator.
       0.563
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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