STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0937PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bpu:BPUM_3223 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (365 aa)    
Predicted Functional Partners:
Pmob_0936
PFAM: transferase hexapeptide repeat containing protein; KEGG: btk:BT9727_3282 possible galactoside O-acetyltransferase.
  
 0.908
Pmob_0939
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tme:Tmel_1072 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.906
Pmob_0938
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.862
Pmob_0935
KEGG: mmw:Mmwyl1_0827 hypothetical protein.
 
  
 0.830
Pmob_0933
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fno:Fnod_0568 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.663
Pmob_1283
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD.
 
  
 0.629
Pmob_0929
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: tme:Tmel_1063 sugar transferase.
 
  
 0.604
Pmob_1801
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tma:TM1548 lipopolysaccharide biosynthesis protein.
 
  
 0.558
Pmob_0934
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: amt:Amet_0194 regulatory protein, MarR.
       0.554
Pmob_0941
PFAM: polysaccharide biosynthesis protein; KEGG: tpt:Tpet_0306 polysaccharide biosynthesis protein.
  
  
 0.535
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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