Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_0945PFAM: lipopolysaccharide biosynthesis protein; KEGG: tme:Tmel_0659 lipopolysaccharide biosynthesis protein. (625 aa)    
Predicted Functional Partners:
Pmob_1613
PFAM: polysaccharide export protein; KEGG: tme:Tmel_0660 polysaccharide export protein.
 
 
 0.938
Pmob_0823
KEGG: tme:Tmel_0221 exporter of the RND superfamily-like protein.
  
     0.731
Pmob_1185
KEGG: tme:Tmel_0456 hypothetical protein.
  
     0.729
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
 
     0.702
Pmob_1114
PFAM: WD-40 repeat protein; KEGG: ava:Ava_3078 peptidase C14, caspase catalytic subunit P20.
  
     0.702
Pmob_0959
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tme:Tmel_1405 hypothetical protein.
 
  
 0.650
Pmob_0944
Capsular exopolysaccharide family; KEGG: tme:Tmel_0659 lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
0.627
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
 
  
 0.613
Pmob_1159
PFAM: Citrate transporter; protein of unknown function DUF401; KEGG: tma:TM0481 hypothetical protein.
  
     0.600
Pmob_1892
Hypothetical protein; KEGG: ter:Tery_0530 conserved hypothetical protein, conserved.
  
     0.599
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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