STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0959Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tme:Tmel_1405 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
 
  
 0.888
Pmob_0960
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fno:Fnod_0174 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.888
Pmob_1613
PFAM: polysaccharide export protein; KEGG: tme:Tmel_0660 polysaccharide export protein.
 
  
 0.887
Pmob_0944
Capsular exopolysaccharide family; KEGG: tme:Tmel_0659 lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.830
Pmob_0961
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: tpt:Tpet_0335 UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.738
Pmob_1228
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: tpt:Tpet_0472 surface antigen (D15).
  
  
 0.737
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
 
     0.735
Pmob_0331
Flagellar basal body L-ring protein-like protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
    0.713
Pmob_1716
PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tme:Tmel_1557 peptidoglycan-binding LysM.
 
     0.713
rnfG
Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
  
     0.693
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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