STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0989PFAM: periplasmic solute binding protein; KEGG: fno:Fnod_0860 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family. (295 aa)    
Predicted Functional Partners:
Pmob_0988
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_0800 ABC transporter related.
 
 
 0.999
Pmob_0987
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: tme:Tmel_0435 ABC-3 protein.
 
 0.998
Pmob_0990
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: tme:Tmel_0432 ferric uptake regulator, Fur family; Belongs to the Fur family.
 
  
 0.785
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.592
rpmB
PFAM: ribosomal protein L28; KEGG: tpt:Tpet_0669 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.584
Pmob_0572
PFAM: iron dependent repressor; FeoA family protein; KEGG: pab:PAB0714 iron-dependent repressor.
  
  
 0.576
Pmob_0991
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; calcium-translocating P-type ATPase, PMCA-type; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cbf:CLI_0611 calcium-translocating P-type ATPase, PMCA-type.
     
 0.426
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.