Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_1014PFAM: Lytic transglycosylase catalytic; KEGG: tme:Tmel_1311 lytic transglycosylase, catalytic. (202 aa)    
Predicted Functional Partners:
Pmob_1716
PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tme:Tmel_1557 peptidoglycan-binding LysM.
 
  
 0.752
Pmob_1372
PFAM: Lytic transglycosylase catalytic; KEGG: mxa:MXAN_4628 transglycosylase SLT domain protein.
  
     0.646
Pmob_1015
KEGG: tko:TK0242 ATP phosphoribosyltransferase, predicted regulatory subunit.
 
     0.636
Pmob_1087
Hypothetical protein; KEGG: rba:RB13291 general secretion pathway protein D (outD); Belongs to the bacterial secretin family.
 
  
 0.635
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
  
  
 0.623
Pmob_0824
KEGG: ppr:PBPRB1987 hypothetical protein.
 
     0.607
Pmob_0449
PFAM: metallophosphoesterase; KEGG: tde:TDE1124 hypothetical protein.
  
     0.606
Pmob_0878
KEGG: tme:Tmel_1841 hypothetical protein.
  
     0.587
Pmob_1352
PFAM: permease YjgP/YjgQ family protein; KEGG: tme:Tmel_1543 permease YjgP/YjgQ family protein.
  
  
 0.583
Pmob_1613
PFAM: polysaccharide export protein; KEGG: tme:Tmel_0660 polysaccharide export protein.
  
     0.577
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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