STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1069PFAM: protein of unknown function DUF45; KEGG: csc:Csac_2672 protein of unknown function DUF45. (223 aa)    
Predicted Functional Partners:
Pmob_1070
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.923
Pmob_1071
PFAM: restriction modification system DNA specificity domain; KEGG: chy:CHY_0831 putative type I restriction-modification system, S subunit.
 
    0.907
Pmob_1072
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: csc:Csac_2680 type I restriction-modification system, M subunit.
     0.899
Pmob_1899
PFAM: protein of unknown function DUF45; KEGG: mta:Moth_1669 metal-dependent hydrolase-like.
  
     0.630
Pmob_1896
PFAM: N-6 DNA methylase; KEGG: mtp:Mthe_1211 N-6 DNA methylase.
      0.458
Pmob_1897
PFAM: restriction modification system DNA specificity domain; KEGG: rrs:RoseRS_2689 restriction modification system DNA specificity domain.
 
    0.441
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.