STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1099PFAM: inner-membrane translocator; KEGG: ckl:CKL_0620 predicted ABC transporter, permease component; Belongs to the binding-protein-dependent transport system permease family. (329 aa)    
Predicted Functional Partners:
Pmob_1098
PFAM: protein of unknown function DUF534; KEGG: hch:HCH_04501 ABC-type uncharacterized transport system, periplasmic component.
    0.997
Pmob_1100
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0619 predicted ABC transporter, ATPase component.
    0.992
Pmob_0859
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: fno:Fnod_1236 metal dependent phosphohydrolase.
  
    0.661
Pmob_1101
PFAM: UvrD/REP helicase; KEGG: tme:Tmel_0419 UvrD/REP helicase.
       0.490
corA
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.490
Pmob_1103
TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tme:Tmel_1892 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
       0.433
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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