STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1301PFAM: polysaccharide biosynthesis protein; KEGG: tpt:Tpet_0306 polysaccharide biosynthesis protein. (483 aa)    
Predicted Functional Partners:
Pmob_0939
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tme:Tmel_1072 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.755
Pmob_0126
PFAM: glycosyl transferase group 1; KEGG: tpt:Tpet_0309 hypothetical protein.
 
  
 0.749
Pmob_1812
PFAM: glycosyl transferase family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0171 glycosyl transferase, family 2.
 
  
 0.717
Pmob_0935
KEGG: mmw:Mmwyl1_0827 hypothetical protein.
 
    0.657
Pmob_1074
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214.
  
     0.653
Pmob_1809
PFAM: glycosyl transferase group 1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fno:Fnod_0061 glycosyl transferase group 1.
 
  
 0.652
Pmob_0938
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.624
Pmob_1800
TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: fno:Fnod_1450 glucose-1-phosphate thymidyltransferase.
  
  
 0.624
Pmob_1306
PFAM: glycosyl transferase group 1; KEGG: tma:TM0619 hypothetical protein.
 
  
 0.611
Pmob_0944
Capsular exopolysaccharide family; KEGG: tme:Tmel_0659 lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.603
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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