STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1340PFAM: Radical SAM domain protein; KEGG: tpt:Tpet_1467 radical SAM domain protein. (467 aa)    
Predicted Functional Partners:
Pmob_1339
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1328 ABC transporter, ATP-binding protein.
       0.773
Pmob_1561
PFAM: Radical SAM domain protein; KEGG: tte:TTE2746 arylsulfatase regulator (Fe-S oxidoreductase).
  
     0.768
Pmob_1074
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214.
  
     0.546
Pmob_1135
PFAM: glycoside hydrolase family 13 domain protein; KEGG: tma:TM1844 hypothetical protein.
  
     0.514
Pmob_1791
KEGG: tme:Tmel_0730 vitamin B12 dependent methionine synthase, activation region.
  
     0.504
Pmob_0404
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cbf:CLI_1631 transcriptional regulator, LuxR family.
 
     0.495
Pmob_1812
PFAM: glycosyl transferase family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0171 glycosyl transferase, family 2.
  
     0.463
Pmob_1565
PFAM: Radical SAM domain protein; KEGG: tme:Tmel_0095 radical SAM domain protein.
  
     0.458
Pmob_1809
PFAM: glycosyl transferase group 1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fno:Fnod_0061 glycosyl transferase group 1.
  
     0.452
Pmob_1338
Hypothetical protein.
       0.444
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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