STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1463PFAM: Heptaprenyl diphosphate synthase component I; KEGG: tpt:Tpet_1237 heptaprenyl diphosphate synthase component I. (173 aa)    
Predicted Functional Partners:
Pmob_1462
PFAM: protein of unknown function DUF1312; KEGG: tpt:Tpet_1238 protein of unknown function DUF1312.
 
    0.939
Pmob_0188
PFAM: Polyprenyl synthetase; KEGG: tma:TM0161 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.927
Pmob_1461
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.918
Pmob_0617
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.900
Pmob_1460
PFAM: Radical SAM domain protein; KEGG: fno:Fnod_0983 radical SAM domain protein.
       0.800
Pmob_1464
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.800
Pmob_1459
PFAM: AMMECR1 domain protein; KEGG: fno:Fnod_1690 AMMECR1 domain protein.
       0.748
Pmob_1465
PFAM: DNA repair protein RadC; KEGG: tma:TM1557 DNA repair protein; Belongs to the UPF0758 family.
 
     0.717
Pmob_1466
KEGG: tme:Tmel_0216 hypothetical protein.
       0.669
rnfC
Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
 
     0.624
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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