STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1574PFAM: transglutaminase domain protein; KEGG: efa:EF1512 hypothetical protein. (453 aa)    
Predicted Functional Partners:
Pmob_1573
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: tko:TK0504 aspartate racemase.
 
     0.678
Pmob_1074
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214.
 
     0.541
Pmob_0259
KEGG: tpt:Tpet_0002 tRNA (guanine-N(7)-)-methyltransferase.
  
     0.499
Pmob_0538
KEGG: mgm:Mmc1_2227 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
     
 0.495
Pmob_0256
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: tme:Tmel_0530 ribosomal protein L7Ae/L30e/S12e/Gadd45.
  
    0.467
Pmob_1812
PFAM: glycosyl transferase family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0171 glycosyl transferase, family 2.
 
     0.435
Pmob_1575
PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM0460 putative oligopeptide transport system substrate-binding protein.
       0.431
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; argininosuccinate synthase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: tte:TTE0816 Carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.426
Pmob_1458
PFAM: major facilitator superfamily MFS_1; KEGG: fno:Fnod_0397 hypothetical protein.
  
     0.405
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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