STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1605PFAM: Auxin Efflux Carrier; KEGG: mmw:Mmwyl1_2873 auxin efflux carrier. (322 aa)    
Predicted Functional Partners:
Pmob_0949
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: tma:TM0542 malate oxidoreductase.
  
  
 0.714
Pmob_1604
Transaldolase-like protein; KEGG: spd:SPD_0236 transaldolase, putative.
       0.582
Pmob_1606
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM0299 transcriptional regulator, LacI family.
       0.580
Pmob_1603
PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU; Belongs to the RbsD / FucU family.
       0.568
Pmob_1600
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3227 periplasmic binding protein/LacI transcriptional regulator.
 
     0.564
Pmob_1601
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0956 D-ribose transport system ATP-binding protein.
       0.531
Pmob_1602
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mlo:mlr3338 permease protein, sugar ABC transporter (ribose); Belongs to the binding-protein-dependent transport system permease family.
       0.531
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.