STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1608PFAM: L-fucose isomerase _1 domain protein; L-fucose isomerase _2 domain protein; L-fucose isomerase-like-like; KEGG: tpt:Tpet_0610 L-fucose isomerase, N-terminal_2 domain protein. (471 aa)    
Predicted Functional Partners:
Pmob_1609
Xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: tma:TM0284 sugar kinase, FGGY family.
 
 
 0.942
Pmob_0025
PFAM: PfkB domain protein; KEGG: fno:Fnod_0447 PfkB domain protein.
    
  0.808
Pmob_1154
PFAM: PfkB domain protein; KEGG: tma:TM0296 fructokinase.
    
  0.808
Pmob_1603
PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU; Belongs to the RbsD / FucU family.
 
  
 0.763
Pmob_0133
PFAM: carbohydrate kinase FGGY; KEGG: cpf:CPF_1049 L-fuculokinase.
 
  
 0.714
Pmob_0914
PFAM: ADP-ribosylation/Crystallin J1; KEGG: oan:Oant_4445 ADP-ribosylation/crystallin J1.
  
     0.623
Pmob_1607
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tpt:Tpet_0550 methyl-accepting chemotaxis sensory transducer.
  
    0.571
Pmob_1074
PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214.
 
     0.569
Pmob_0985
PFAM: cobalamin B12-binding domain protein; KEGG: tme:Tmel_0082 cobalamin B12-binding domain protein.
  
   
 0.567
Pmob_1600
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3227 periplasmic binding protein/LacI transcriptional regulator.
 
     0.565
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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