STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1713PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: lpl:lp_0179 alpha-amylase. (426 aa)    
Predicted Functional Partners:
Pmob_0061
KEGG: tpt:Tpet_0959 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 0.952
Pmob_1139
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bld:BLi00656 alpha-amylase precursor.
  
  
  0.935
Pmob_1265
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM1835 cyclomaltodextrinase, putative.
 
  
 
0.932
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.931
Pmob_0252
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0614 alpha-amylase family protein.
  
  
 
0.929
Pmob_0369
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vvy:VV2128 glycosidase; Belongs to the glycosyl hydrolase 13 family.
 
  
 
0.929
Pmob_1431
Alpha amylase catalytic region; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase; Belongs to the glycosyl hydrolase 13 family.
  
  
 
0.929
Pmob_1799
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cya:CYA_1097 trehalose synthase/putative maltokinase.
  
  
 
0.929
Pmob_1750
KEGG: tme:Tmel_0548 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.927
Pmob_1871
KEGG: cth:Cthe_0357 alpha-glucan phosphorylases; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 0.925
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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