STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1790TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tme:Tmel_0040 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily. (277 aa)    
Predicted Functional Partners:
Pmob_0302
PFAM: 3-dehydroquinate synthase; KEGG: cbe:Cbei_2364 glycerol-1-phosphate dehydrogenase (NAD(P)(+)).
  
 0.751
Pmob_1323
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_0414 Appr-1-p processing domain protein.
 
      0.607
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
    0.579
Pmob_1792
PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: tme:Tmel_0729 homocysteine S-methyltransferase.
     
 0.541
Pmob_1788
1-phosphofructokinase; KEGG: tme:Tmel_1834 PfkB domain protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
     0.482
Pmob_1793
KEGG: tma:TM0943 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
 
  
 0.481
Pmob_0646
KEGG: fno:Fnod_0761 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II.
 
    0.461
Pmob_1791
KEGG: tme:Tmel_0730 vitamin B12 dependent methionine synthase, activation region.
       0.459
Pmob_1552
KEGG: tpt:Tpet_0114 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
  
 0.430
Pmob_1789
PFAM: aldo/keto reductase; KEGG: btl:BALH_1790 oxidoreductase, aldo/keto reductase family.
       0.416
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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