STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1832PFAM: CheC domain protein; KEGG: fno:Fnod_0826 CheC domain protein. (137 aa)    
Predicted Functional Partners:
Pmob_1392
PFAM: response regulator receiver; KEGG: tme:Tmel_0931 response regulator receiver protein.
 
 
 0.936
Pmob_1715
KEGG: tpt:Tpet_0349 uncharacterized protein-like protein.
 
     0.727
Pmob_1231
PFAM: protein of unknown function DUF342; KEGG: tme:Tmel_1534 protein of unknown function DUF342.
  
     0.702
rpmB
PFAM: ribosomal protein L28; KEGG: tpt:Tpet_0669 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.582
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
  
    0.555
gltX2
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.547
cysS
KEGG: tme:Tmel_0064 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.547
Pmob_0998
PFAM: cell division protein FtsA; KEGG: tme:Tmel_1919 cell division protein FtsA.
  
     0.410
Pmob_1390
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: tpt:Tpet_0228 CheA signal transduction histidine kinase.
   
 
 0.404
Pmob_1401
PFAM: type IV pilus assembly PilZ; KEGG: tme:Tmel_1434 type IV pilus assembly PilZ.
  
     0.402
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.