Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_1920PFAM: TrkA-C domain protein; KEGG: tme:Tmel_1261 TrkA-N domain protein. (224 aa)    
Predicted Functional Partners:
Pmob_1921
PFAM: cation transporter; KEGG: tme:Tmel_1260 cation transporter.
 
 
 0.969
Pmob_1919
PFAM: TrkA-N domain protein; KEGG: tpt:Tpet_1656 TrkA-N domain protein.
 
     0.949
hslU
Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
  
  
 0.625
Pmob_1695
PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: tme:Tmel_1425 CBS domain containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.516
Pmob_1917
KEGG: tme:Tmel_0922 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
  
    0.513
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
  
     0.456
Pmob_1228
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: tpt:Tpet_0472 surface antigen (D15).
 
     0.456
Pmob_1185
KEGG: tme:Tmel_0456 hypothetical protein.
 
     0.435
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
  
     0.427
Pmob_1353
PFAM: PhoU family protein; KEGG: tpt:Tpet_1029 phosphate uptake regulator, PhoU.
  
  
 0.417
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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