Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pmob_1925PFAM: ROK family protein; KEGG: gtn:GTNG_2360 putative xylose repressor gene, putative. (388 aa)    
Predicted Functional Partners:
Pmob_1924
PFAM: extracellular solute-binding protein family 1; KEGG: tme:Tmel_0818 extracellular solute-binding protein, family 1.
  
    0.620
Pmob_1922
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tme:Tmel_0820 binding-protein-dependent transport systems inner membrane component.
       0.462
Pmob_1923
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tme:Tmel_0819 binding-protein-dependent transport systems inner membrane component.
       0.462
Pmob_0520
PFAM: ROK family protein; putative N-acetylmannosamine-6-phosphate epimerase; KEGG: fnu:FN1476 N-acetylmannosamine-6-phosphate 2-epimerase.
 
  
0.444
tpiA
Phosphoglycerate kinase., Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.421
Pmob_1927
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tpt:Tpet_1512 two component transcriptional regulator, winged helix family.
     
 0.411
Pmob_1928
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
  
    0.403
Pmob_1926
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tme:Tmel_1823 histidine kinase.
       0.400
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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